Supercomputers support research into cancer ­treatment, among other disciplines, says Himanshu Sharma of UIC’s Advanced Cyberinfrastructure for Education and Research.

Universities Leverage High-Performance Computing for Multiple Returns on Investment

HPC can provide a competitive advantage, and is a teaching tool and a boon to research funds.

If you build it, they will come — or, at the very least, if you don’t build it, they’ll probably go somewhere else.

The “it” here refers to high-performance computing resources, and “they” refers to talented faculty members. More and more, HPC is becoming a competitive differentiator for institutions vying for top researchers.

As computing power becomes increasingly commoditized (and therefore more affordable), faculty in the humanities and social sciences are becoming HPC users, joining colleagues from more traditionally research-intensive fields such as biomedicine and engineering, creating even more demand for resources.

The University of Illinois at Chicago provided a special incentive for its first endowed chair of physics and chemistry to come to campus: a commitment to build out an HPC cluster that would support his unique research in molecular dynamics.

Meanwhile, the University of Virginia’s Department of Computer Science has largely moved away from custom-built HPC environments, instead building out larger pools of standardized resources. And North Carolina State University has partnered with Lenovo to get access to latest-generation HPC technologies for research that relies on AI and deep learning.

Each university has taken a different approach to provisioning HPC resources, and all support various types of research. But at all three institutions, HPC plays a role in attracting talented faculty and supporting their work.

MORE FROM EDTECH: Check out how solid-state drives can help universities take their computing to the next level. 

UIC Builds Custom Cooling Solution for HPC Cluster

To support the research of a new ­physics and chemistry chair, computing staff at the University of Illinois at Chicago knew they’d need to build a cluster powered by graphics processing units, as opposed to traditional CPUs. But they also knew that powering and cooling such a system would be a challenge.

“One of the best ways you can understand mechanics of diseases such as cancer and develop more effective therapies is by simulating the behavior of molecules in our body with a supercomputer, to see how proteins and a drug would interact,” says Himanshu Sharma, who directs UIC’s Advanced Cyberinfra­structure for Education and Research (ACER). “You can speed up molecular dynamics research tremendously with applications optimized for GPUs versus CPUs only. Your computation time can go down by a factor of eight to 10.”

The problem, he notes, is that GPUs consume much more power and cooling than traditional CPUs. The cluster required 200 P100 16-gigabyte Nvidia GPUs and 100 Intel Xeon processors installed in 50 physical compute nodes.“

Himanshu Sharma
HPC is a great recruitment tool, and something that our colleges are planning to highlight more and more.”

Himanshu Sharma Director of Advanced Cyberinfrastructure for Education and Research, University of Illinois at Chicago

We had to go back and forth multiple times to make sure the hardware was optimized for the application,” Sharma says. “We even studied all the major cloud providers to see if it made sense to just have this built out in the cloud. We also looked at colocation facilities. But those options weren’t cost-effective at all.”

ACER cools most of its data center through perforated tiles in the floor, but staff placed the GPU cluster in its own hot-aisle containment section with in-row Vertiv cooling and APC power distribution units.

“Because the load was very high, we could not rely on just cold air being pushed up from the bottom. We had to put cooling units in a hot-aisle containment setting,” Sharma says. “The solution provides uniform cooling to all the racks, instead of just cold air from the bottom.”

At the moment, the new GPU cluster is primarily being used by the lab of the faculty member who requested it, but Sharma says there are plans to open it up for use by other research labs. 

ACER is also hiring a staffer who will serve as a liaison for professors who need assistance using HPC for their research.

HPC is a great recruitment tool, and something that our colleges are planning to highlight more and more,” Sharma says. “Having these resources offered centrally can really make a difference.” 

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HPC Environments Support Instruction and Research Funding

The University of Virginia’s computer science department also recently invested in GPU computing, phasing out inefficient custom-built solutions in favor of a large, standardized environment. The new cluster has five general-purpose machines for testing code, 20 systems with one to two GPUs each and 46 larger systems that each operate with four or more GPU cards.

The department uses Nvidia GeForce GTX 1080 Ti GPU cards on both HPE ProLiant ML350 and HPE Apollo 6500 platforms, and has also deployed the System76 Ibex Pro GPU server (configured with four Nvidia Titan V GPUs per server).

Paul Henderson, director of the department’s Research Support Center, says investments like this are key to attracting faculty. But, he says, they also elevate instruction throughout the department, because even undergraduates have access to some of the resources.

Paul Henderson
Paul Henderson, Director of the UVA computer science department’s Research Support Center, says HPC resources attract strong faculty, enhance teaching and facilitate research funding. Photography by: Jonathan Timmes.

“A lot of researchers were demanding GPU systems,” Henderson notes. “In the past year, we’ve added 12 new faculty members. It’s put a lot of pressure on our resources and our capabilities, but that’s a good problem to have. The growth has been great, and it’s really enabled the faculty to move these systems into instructional use, which is something new that we’re seeing — undergrads accessing clusters of machines that they wouldn’t have been able to access in the past.”

Henderson jokes that his center is a “benevolent dictator” when it comes to parceling out HPC resources. Computer science faculty members use grant money and “startup” funds they receive from the university to help fund new clusters. Then the Research Support Center deploys the resources — with the understanding that others in the department can use them when the initiating faculty member doesn’t need exclusive access.

The presence of high-quality HPC resources can potentially position faculty members to win additional grants that further their research.

“Generally, if you can show to a granting organization like the National Science Foundation that you have the capability — the right power, cooling, network and support — to conduct the research, the granting party feels more at ease allocating funding to a researcher,” Henderson says. “If you don’t have that environment, it becomes more difficult.”

Real-Time Data Helps Researchers Deliver Real-World Results

Daniel Reed, senior vice president for academic affairs at the University of Utah and former board chair for the Computing Research Association, says that HPC is gaining importance across academic fields.

“HPC clusters have proliferated across academic campuses because computing is an intellectual amplifier for all disciplines,” he says. “Use in the social sciences and the humanities is still small, but it’s certainly growing. There’s much more balance than there was in the past.”

35%

The percentage of the HPC market that will consist of AI-focused use cases by 2025, up from just 7 percent in 2017

Source: tractica.com, “Enterprise High-Performance Computing Market to Reach $31.5 Billion by 2025,” May 30, 2018

Raju Vatsavai, associate professor of computer science at North Carolina State University, conducts research on climate change, water, energy and food security that relies on deep learning. Researchers now, he says, look to HPC to analyze Big Data almost in real time.

As a Lenovo partner, Vatsavai has access to the company’s AI Innovation Center in Morrisville, N.C. (Two more centers are located in Germany and China.) While NCSU has its own HPC resources, he says, access to the Lenovo ThinkSystem with Intel Xeon Scalable processors is speeding up his work.

“The time scale used to be weeks or months to crunch numbers, to generate spatiotemporal information,” says Vatsavai. “But there are so many applications now where you need real-time information. Say there are weeds growing today. If you wait a month to acquire the data and analyze it, in that month, the weeds will have grown from a small patch to tens of acres. That is where the use of HPC is becoming more prevalent, even in nontraditional domains, like food, energy and water.”

Bob Stefko
Apr 17 2019

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